Lines Matching refs:pdbname1
102 String pdbname1 = defaultProps.getProperty(this.PDBTAG1); in parsePropertyFile() local
106 if ((listFile == null) && ((pdbname1 == null) || (pdbname2 == null))) in parsePropertyFile()
131 if (! checkFile(pdbname1)) return; in parsePropertyFile()
133 populatePDBArray(pdbname1, pdbname2); in parsePropertyFile()
298 private void populatePDBArray(String pdbname1, String pdbname2) in populatePDBArray() argument
300 if (pdbname1 == null) return; in populatePDBArray()
303 if ((pdbname1 != null) && (pdbname2 != null)) in populatePDBArray()
308 pdbarr1[0] = pdbname1; in populatePDBArray()
343 private boolean comparePDB(String pdbname1, String pdbname2) in comparePDB() argument
348 pdb1 = decoder.parse(pdbname1); in comparePDB()
350 System.out.println("Could not parse PDB " + pdbname1); in comparePDB()
362 writeToLog("PDB " + pdbname1 + " and PDB " + pdbname2 + " are equal"); in comparePDB()
366 writeToLog("PDB " + pdbname1 + " and PDB " + pdbname2 + " are not equal"); in comparePDB()
414 private void writeToOutputFile(String status, String pdbname1, String pdbname2) in writeToOutputFile() argument
417 if (pdbname1 == null) return; in writeToOutputFile()
420 String msg = pdbname1 + "=" + pdbname2 + ":" + status; in writeToOutputFile()