Lines Matching refs:pdbname2
103 String pdbname2 = defaultProps.getProperty(this.PDBTAG2); in parsePropertyFile() local
106 if ((listFile == null) && ((pdbname1 == null) || (pdbname2 == null))) in parsePropertyFile()
132 if (! checkFile(pdbname2)) return; in parsePropertyFile()
133 populatePDBArray(pdbname1, pdbname2); in parsePropertyFile()
298 private void populatePDBArray(String pdbname1, String pdbname2) in populatePDBArray() argument
301 if (pdbname2 == null) return; in populatePDBArray()
303 if ((pdbname1 != null) && (pdbname2 != null)) in populatePDBArray()
309 pdbarr2[0] = pdbname2; in populatePDBArray()
343 private boolean comparePDB(String pdbname1, String pdbname2) in comparePDB() argument
355 pdb2 = decoder.parse(pdbname2); in comparePDB()
357 System.out.println("Could not parse PDB " + pdbname2); in comparePDB()
362 writeToLog("PDB " + pdbname1 + " and PDB " + pdbname2 + " are equal"); in comparePDB()
366 writeToLog("PDB " + pdbname1 + " and PDB " + pdbname2 + " are not equal"); in comparePDB()
414 private void writeToOutputFile(String status, String pdbname1, String pdbname2) in writeToOutputFile() argument
418 if (pdbname2 == null) return; in writeToOutputFile()
420 String msg = pdbname1 + "=" + pdbname2 + ":" + status; in writeToOutputFile()